.. index::
	   single: midway1; qiime; 1.9
	   single: module; midway1/qiime/1.9

	.. _module_midway1_qiime_1.9:

---------
qiime/1.9
---------

	

name
    QIIME

version
    1.9.1

description
    open source software package for comparison and analysis of microbial communities

url
    http://qiime.org

license
    opensource

built
    Mon Aug 10 13:10:27 CDT 2015

dependencies
    :ref:`module_midway1_gsl_1.16`, :ref:`module_midway1_ghc_6.8`, :ref:`module_midway1_python_2.7-2015q2`, :ref:`module_midway1_R_3.2`, :ref:`module_midway1_java_1.7`, :ref:`module_midway1_cytoscape_2.8`, :ref:`module_midway1_mpi4py_1.3+python-2.7-2015q2`

tags
    :ref:`module_tag_biology`, :ref:`module_tag_genetics and genomics`
	usage
	   Use the module system to load this version of qiime: ``module load midway1; module load qiime/1.9``

	
This module includes all QIIME dependencies, including Amplicon, Infernal,
RDP, Fasttree, USearch, UClust, Mothur, RTax, and emperor. All environment
variables necessary to operate QIIME are defined by the module.


	.. seealso::

		:ref:`module_midway1_qiime_1.6`, :ref:`module_midway1_qiime_1.7` (default), :ref:`module_midway1_qiime_1.8`, :ref:`module_midway1_qiime_1.9`
			All versions available for qiime.
	
		:ref:`modules`
			Full list of software modules available on Midway.

		:ref:`modules_tutorial`
			A tutorial on Midway modules and how to use them.