.. index::
	   single: midway1; tophat; 2.0
	   single: module; midway1/tophat/2.0

	.. _module_midway1_tophat_2.0:

----------
tophat/2.0
----------

	

name
    tophat

version
    2.014

description
    splice junction mapper for RNA-Seq reads

url
    https://ccb.jhu.edu/software/tophat/index.shtml

license
    opensource

built
    Mon Jun  1 10:48:32 CDT 2015

dependencies
    :ref:`module_midway1_boost_1.51`

tags
    :ref:`module_tag_biology`, :ref:`module_tag_genetics`
	usage
	   Use the module system to load this version of tophat: ``module load midway1; module load tophat/2.0``

	

	.. seealso::

		:ref:`module_midway1_tophat_2.0` (default), :ref:`module_midway1_tophat_2.1`
			All versions available for tophat.
	
		:ref:`modules`
			Full list of software modules available on Midway.

		:ref:`modules_tutorial`
			A tutorial on Midway modules and how to use them.